Regulators of regulatory pathway: (p)ppGpp regulatory pathway

All displayed regulators are experimentally validated.


Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0096 experimental PSPTO_RS08845 (relA) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 1863879..1866122 (+) 494457621 T6SS transcripts (↓)
REG0097 experimental PSPTO_RS00410 (spoT) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 94805..96910 (-) 492171753 T6SS transcripts (↓)
REG0098 experimental PSPTO_RS04545 (fpRel) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 927082..927900 (+) 499415849 T6SS transcripts (↓)
REG0148 experimental PSYR_RS19090 (relA) T6SS00086 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. syringae B728a chromosome (NC_007005) 4380642..4382885 (-) 499587809 T6SS transcripts (↓)
REG0149 experimental PSYR_RS01070 (spoT) T6SS00086 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. syringae B728a chromosome (NC_007005) 223004..225109 (-) 489499092 T6SS transcripts (↓)
REG0187 experimental YPK_3449 (RelA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3783755..3785989 (-) 488138165 YPK_1551 (RovM) (↓); YPK_1876 (RovA) (↓)
REG0188 experimental YPK_1876 (RovA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 2082384..2082815 (+) 488139747 T6SS-4 promoter region (↓); T6SS-4 promoter region (↓)
REG0191 experimental YPK_1551 (RovM) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1713682..1714884 (-) 499506038 T6SS-4 promoter region (↓)

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0096 experimental PSPTO_RS08845 (relA) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 1863879..1866122 (+) 494457621 T6SS transcripts (↓)
REG0097 experimental PSPTO_RS00410 (spoT) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 94805..96910 (-) 492171753 T6SS transcripts (↓)
REG0098 experimental PSPTO_RS04545 (fpRel) T6SS00041 insolico; T6SS00042 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. tomato str. DC3000 chromosome (NC_004578) 927082..927900 (+) 499415849 T6SS transcripts (↓)
REG0148 experimental PSYR_RS19090 (relA) T6SS00086 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. syringae B728a chromosome (NC_007005) 4380642..4382885 (-) 499587809 T6SS transcripts (↓)
REG0149 experimental PSYR_RS01070 (spoT) T6SS00086 experimental protein (p)ppGpp regulatory pathway Pseudomonas syringae pv. syringae B728a chromosome (NC_007005) 223004..225109 (-) 489499092 T6SS transcripts (↓)
REG0187 experimental YPK_3449 (RelA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3783755..3785989 (-) 488138165 YPK_1551 (RovM) (↓); YPK_1876 (RovA) (↓)
REG0188 experimental YPK_1876 (RovA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 2082384..2082815 (+) 488139747 T6SS-4 promoter region (↓); T6SS-4 promoter region (↓)
REG0191 experimental YPK_1551 (RovM) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1713682..1714884 (-) 499506038 T6SS-4 promoter region (↓)

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)